Job description and selection criteria
Senior Research Scientist in Environmental Bioengineering
Environment and Biotechnology
Professor Ian Thompson
A competitive remuneration package will apply
Fixed-term (3 years), with the possibility of extension.
20 February, 2020
Application closing date
|31 January, 2020|
The focus of research interest is development of sustainable systems for treatment of industrial effluents, water recycling on site and conversion of organic waste to bioenergy or other high value product. The emphasis is exploiting microbial biodegradation potential for environmental bioremediation and end-of-pipe pollution prevention. An area of particular interest is the application of engineered, physical and chemical approaches for stimulating microbial activities and killing unwanted microbial growth in engineered systems. This includes the application of nanomaterials and ultrasound to stimulate desirable microbial processes or killing and preventing unwanted microbial growth such as the formation of biofilms. A growing interest in the group is the biotransformation of plant materials and organics in wastewater to bioenergy and bioplastics (PHA), and other high value polymers. This includes combined technologies such as electrochemistry and the development of novel bioreactors.
The main duties of this post-holder will include: 1) designing contaminant treatment systems, 2) exploiting and enhancing biodegradation in bioreactors and 3) development of physical and chemical (ultrasound, nanomaterials methods) for stimulating bacteria and killing unwanted growth. The generic approaches developed will have potential applications in treating contaminated soil and water, but also for improving the efficiency of anaerobic digestion for generating high value products such as methane and bioplastics.
The research will include exploiting the ability of indigenous microbial communities to biotransform and biodegrade organic contaminants in water and soil systems, and where appropriate introduction of inocula with proven remedial activity. This will include working closely with Professsors Wei Huang (Synthetic Biology), Ron Roy (Physical Accoustics) and Luet Wong (Chemistry) employing molecular, synthetic biology approaches and developing biosensors for assessing contamination toxicity and dealing with treatment bottle-necks.
- Oversee environmental engineering research in OSCAR and coordinate with other other OSCAR research groups.
- Play and major role in the day-to-day running of the lab and research programme.
- Environmental microbiology, including culture methods for enriching and isolation.
- Molecular methods for profiling single isolates and whole communities.
- Basic chemical analysis (GC-MS, HPLC, BOD/COD) methods for assessing microbial biodegradation characteristics.
- Support the project team in integrating activities (internally and externally) across the partner organisations (in particularly the Synthetic Biology, Accoustic and Biotransformations Teams), including liaison between research teams and carry out administrative roles as required.
- Prepare summary technical and progress review reports for project steering meetings and industrial collaborators, including preparation and delivery of oral presentations at such meetings.
- Prepare papers for journals, presentations and other research outputs either in-house or at national/international conferences or seminars, to disseminate research findings.
- Contribute to the maintenance of the project web pages for the consortium.
- Provide help to other researchers in the same or related field of research, as requested by the project PI.
- Be up to date with regards academic papers, journals and textbooks and attend conferences to keep up-to-date with new developments in the field
- Undertake other duties to be assigned by the project team, as required including supervising and training more junior staff/students.
- Adapt existing and develop new scientific techniques and experimental protocols.
- Test hypotheses and analyse scientific data from a variety of sources, reviewing and refining working hypotheses as appropriate
- Use and help maintain specialist scientific equipment in a laboratory environment.
- To make links laboratories across China and foster collaborations.
- Assist in dealing with intellectual property issues.
- Coordinate OSCAR activity with PI and Oxford research team, in particular the teams lead by Profs Wei Huang, Roy and Wong.
- Manage own academic research and administrative activities. This involves small scale project management, to co-ordinate multiple aspects of work to meet deadlines
- Contribute ideas for new research projects
- Develop ideas for generating research income, and present detailed research proposals to senior researchers
- Collaborate in the preparation of scientific reports and journal articles and occasionally present papers and posters
- Act as a source of information and advice to other members of the group on scientific protocols and experimental techniques
- Represent the research group at external meetings/seminars, either with other members of the group and collaborative industrial partners.
- Carry out collaborative projects with colleagues in partner institutions, and research groups and in particular with industry.
- The post may have the opportunity to teach or undertake ad-hoc paid teaching (this includes lecturing, demonstrating, small-group teaching, tutoring of undergraduates and graduate students and supervision of Masters projects in collaboration with principal investigators). Permission must be sought in advance for each opportunity and the total must not exceed 4 hours a week.
- Play a lead role in establishing and running an effective, productive and happy laboratory.
- Strong background in basic environmental microbiology techniques.
- Strong background on molecular microbiology.
- Good background in chemical analysis for assessing biodegradation.
- Hold a relevant PhD/DPhil (or be near completion), together with relevant experience
- Possess sufficient specialist knowledge in the discipline to work within established research programmes and help train/supervise junior members of the lab.
- Ability to manage own academic research and associated activities
- Previous experience of contributing to publications/presentations
- Ability to contribute ideas for new research projects and research income generation
- Excellent communication skills, including the ability to write for publication, present research proposals and results, and represent the research group at meetings
- Experience of anaerobic microbiology.
- Experience of independently managing a discrete area of a research project
- Experience of working with the commercial sector and/or Government Agencies.
- Guo H, Yu Z & Thompson IP (2014). A contribution of hydrogenotrophic methanogenesis to the biogenic coal bed methane reserves of Southern Qinshui Basin, China. Applied Microbiology & Biotechnology 21, 9083-9093.
- Mason MP, Glover K, Smith JAC & Thompson IP (2015). The potential of CAM crops as a globally significant bioenergy resource: moving from ‘fuel or food’ to fuel and more food’. Energy & Environmental Science 8, 2320-2329.
- Thill PG, Ager DK, Vojnovic B, Scott T & Thompson IP (2016). Hybrid biological, electron beam and iron nanoparticles for treatment of metal working fluids. Water Research 93, 214-221.
- Ortega-Calvo JJ, Jimenez-Sanchez C, Pratarolo P, Pullin H, Scott TB & Thompson IP (2016). Tactic response of bacteria to zero-valent iron nanoparticles. Environmental Pollution 13, 438-445.
- Adapa LM, Azimi Y, Singh S, Porcelli D & Thompson IP (2016). Comparative study of chemical and physical methods for distinguishing between passive and metabolically active mechanisms of water contaminant removal by biofilms. Water Research 101, 574-581.
- Chan AC, Cadena MB, Townley HE, Fricker MD & Thompson IP (2017). Effective delivery of volatile biocides employing mesoporous silicates for treating biofilms. J. of the Royal Society Interface 14, 126, 20160650.
- Song YZ, Kaster AK, Vollmers J, Song YQ, Davison PA, Frentrup M, Preston GM, Thompson IP, Murrell JC, Yib HB & Huang WE (2017). Single-cell genomics based on Raman sorting reveals novel carotenoid-containing bacteria in the Red Sea. Microbial Biotechnology 10, 125-137.
- Zhang YM, Yu ZS, Zhang HX & Thompson IP (2017) Microbial distribution and variation in produced water from separators to storage tanks of shale gas wells in Sichuan Basin, China. Environmental Science-Water Resreach & Technology 3, 340-351.
- Azimi Y & Thompson IP (2017). Phosphorus depletion as a green alternative to biocides for controlling biodegradationof metal working fluids. Environmental Science & Technology 51, 5695-5702.
- Development of SimCells as a novel chassis for functional biosensors. Rampley CPN, Davison P, Qian P, Preston GM, Hunter CN, Thompson IP, Wu LJ & Huang WF (2017). Scientific Reports 7, 7261.
- Song Y, Yizhi, Li C, Lopez JAS, Xu JB, Zhu YG, Thompson IP & Huang WE (2017). Raman-Deutrium isotope probing for in-situ indentification of antimicrobial resistant bacteria in Thames River. Scientific Reports 7, 16648.
- Zhang Q, Amor K, Galer SJG, Thompson IP & Porcelli D. (2018). Variation of stable isotope fractionation during bacterial chromium reduction processes and their implications. Chemical Geology 418, 155-164.
- Cadena M, Preston GM, Townley H & Thompson IP (2018) Species-specific antimicrobial activity of essential oils and enhancement by encapsulation in mesoporous silica nanoparticles. Industrial Crops and Productes, in press.
About OSCAR (Oxford Suzhou Centre for Advanced Research)
OSCAR, the first overseas research centre of the University of Oxford, is working closely with the Suzhou Industrial Park and both academic and industrial collaborators in China to progress a range of exciting societal and economic development opportunities.
As a multidisciplinary research, innovation and technology centre, OSCAR focuses on research challenges and technologies that both complement the Centre’s location in Suzhou Industrial Park and capitalise on current Oxford research strengths. Research will initially be focused around the areas of biomedical engineering, biomedicine, advanced functional materials, electronic / optoelectronic / photonic devices, environmental technology, energy, mathematical and computational applications in finance and in health, and other related science and engineering disciplines.
The Centre is positioned in Suzhou Dushu Lake Science and Education Innovation District (SEID), a district in southern SIP with a high concentration of science, education and innovation activity. SEID is the prototype of higher education internationalization in China which hosts 32 local and foreign universities and institutions. The Centre, housed in a nine-storey building with a gross space of 20,000m2, offers flexible access to facilities for multi-functional activities such as labs, seminars, workshops, training, public events, and administration, etc.
Guidance for Applicants
Thank you for your interest in applying for posts at the Oxford-Suzhou Centre for Advanced Research (OSCAR). Please read the following tips to help you proceed with the application process.
Before the application:
Please read carefully the job description and selection criteria for the post for which you are applying at the OSCAR website: https://oscar.web.ox.ac.uk to determine whether you have the required skills, knowledge, and experience as advertised. Please DO NOT apply for the posts which are currently unavailable. We typically receive many applications for each post, and so you will need to show in a covering letter how you meet the essential criteria and the desirable criteria in order to be shortlisted for interview.
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Covering letter (no longer than one page)
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Oxford Suzhou Centre for Advanced Research